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  • add-param-multiqc
  • add_microSysMics_utils
  • aldex2
  • develop
  • fix-alpha-rarefaction
  • fix-evolution_nbreads
  • fix-jinja-version
  • fix-multiqc
  • master par défaut
  • prefilter-dada2
  • singularity
  • Qiime2.2020.6
  • Qiime2.2019.1
  • v2.0
  • v1.0
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Created with Raphaël 2.2.020Oct141Oct13Sep1028May9Apr17Mar16151211102116Feb5121Jan1911818Dec17151119Nov10436Oct10Sep986Jul20May141329Apr243126Mar242321201713418Feb171224Jan27Nov22201924Sep1322Aug206Jun28May763230Apr261615106Feb16Jan1511987430Nov29282711Oct1094325Jul191228Jun2621191425May15144227Apr262524232018176Mar526Feb232294Jan21Dec17Nov8Sep30Aug2221181727JulAdd LICENSEmastermasterDelete LICENSEfixed fastqc and multiqc conda envsMerge branch 'fix-jinja-version' into 'master'fix issues #40fix-jinja-versionfix-jinja-versionMerge branch 'add-param-multiqc' into 'master'add possibility to give params to multiqcadd-param-multiqcadd-param-multiqcMerge branch 'fix-alpha-rarefaction' into 'master'Fix params that was ignored in alpha-rarefactionfix-alpha-raref…fix-alpha-rarefactionfix bad copy/paste in scripts/evolution_nbreads.pyMerge branch 'fix-multiqc' into 'master'Merge branch 'fix-evolution_nbreads' into 'master'Update multiqc to fix openssl>1.0 constraintfix-multiqcfix-multiqcdirty fix for https://gitlab.univ-nantes.fr/bird_pipeline_registry/microSysMics/-/issues/39fix-evolution_n…fix-evolution_nbreadsAdd LICENSEUpdate README.mddevelopdevelopMinor changes in json schemaUpdate README.mdMerge branch 'develop' of gitlab.univ-nantes.fr:bird_pipeline_registry/microSysMics into developAdd hidden configuration file in output directory, correct bug in reportEvolution nb read as local rule beaucse of X11 errorReport : Add config sectionReport : deal with non found sectionsFix bug in renaming taxonomy tsv fileCorrect bug in ASV ID order, cosmetic changesAlpha diversity figuresadd_microSysMic…add_microSysMics_utilsFirst try microsysmics_utilsFirst try microsysmics_utilsMerge commit 'ee9a2872281d77412f49c84211756a8eb5e5d919' as 'scripts/microsysmics_utils'Squashed 'scripts/microsysmics_utils/' content from commit 4cd0610Merge commit 'c4a4e5b1df0f5f46f72954abd6f76b633255c63c' as '.scripts/microsysmics_utils'Squashed '.scripts/microsysmics_utils/' content from commit 4cd0610Add the possibility to give a percetage rather a count for the prevalence thresholdCorrect bugs in export diversityUse os rather than subprocess to export rarefied table, bug clusterExport rarefied table in BIOM and TSV formatFix bug when exporting taxonomy with UNITE databaseMerge branch 'develop' of gitlab.univ-nantes.fr:bird_pipeline_registry/microSysMics into developAdd plots to visualize DESeq2 significant ASVs along with their abundance and taxonomyFix evolution nb reads plot size