Commit 394fb37a authored by Erwan DELAGE's avatar Erwan DELAGE
Browse files


parent 44606bc1
......@@ -36,6 +36,8 @@ You should see the command lines correponding to each workflow rule coming up on
If using a cluster, the call is slightly different :
source activate microSysMics
# The following awk command just set absolute filepaths in the test manifest file. To run only once.
awk -v P="$(pwd)" 'BEGIN{FS=",";}NR==1{print $1","$2","$3;}NR>1{print $1","P"/"$2","$3;}' test/manifest.csv > test/manifest.tmp && mv test/manifest.tmp test/manifest.csv
snakemake -p --use-conda --latency-wait 60 --cluster "qsub" --jobs 40 --jobscript
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