Commit 9d9174a1 authored by Tommy Tang's avatar Tommy Tang
Browse files

add rule graph

parent 031c871a
......@@ -7,7 +7,7 @@ Now, this is working on LSF, I will have another branch for SLURM.
### work flow of the pipeline
![](./rule_diagram.png)
![](./GEO_rulegraph.png)
### Dependiencies
......@@ -216,7 +216,7 @@ queue short, and executed on the host apple.
## rerun one sample, just specify the name of the target file
./pyflow-ChIPseq -R SRR3144652.sorted.bam
./pyflow-ChIPseq -R 02aln/SRR3144652.sorted.bam
# check snakemake -f, -R, --until options
./pyflow-ChIPseq -f call_peaks_macs2
......
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