jobscript.sh 410 Bytes
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#!/bin/sh
# properties = {properties}
# this is identical to the default jobscript with the exception of the exit code
{exec_job}

# if the job succeeds, snakemake 
# touches jobfinished, thus if it exists cat succeeds. if cat fails, the error code indicates job failure
# see https://groups.google.com/forum/#!searchin/snakemake/immediate$20submit%7Csort:relevance/snakemake/1QelazgzilY/mz0KfAzJAgAJ
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#cat $1