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RNAseq pipeline for gene expression quantification.

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

Toolbox for secondary analysis after using MicroSysMics https://gitlab.univ-nantes.fr/bird_pipeline_registry/microSysMics

This pipeline aims to provide unsupervised data analysis from Singlecell RNAseq data. The alignment is done with Tophat2 followed by htseqcount. After filtering, DeSeq2 and Vst are applied. Finally, the unsupervised analysis is done with WGCNA.

Atac-Seq pipeline in snakemake

An R language library which optimize colors categories assignment in the case of categorical visualizations.

Workflow designed to use biobakery tools for functional and taxonomic profiling of shotgun metagenomic data.