... | ... | @@ -84,9 +84,40 @@ The third parameter is either an alignment file, or, if using L-GRAAL with alpha |
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The output is the hive plot as an html file.
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## Customizing the hiveplot
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The hiveplot can be customized with an additional JSON configuration file. You need to add **--config yourconfigfile** to the HiveAlign call.
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~~~
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{
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"sort" : "mean_clr_abundance",
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"size" : "degree_centrality",
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"color" : "Rank3",
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"tooltip" : ["mean_clr_abundance","Rank3","lineage"],
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"categories" : "Rank3"
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}
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~~~
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Here, *mean_clr_abundance*, *Rank3* and *lineage* are nodes attributes that must be in the graphml file.
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| Options | Possible values | Why ? |
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| :------------ | :-------------: | -------------: |
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| sort | **alphabetical**, node attribute | Sort nodes along the axis |
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| size | **betweenness_centrality**, degree_centrality, keystone_index | Map numerical values to nodes size |
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| color | node attribute | Map categorical values to nodes color |
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| tooltip | list of node attribute | Add info tooltip when hovering on a node |
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| categories | node attribute | Group together nodes belonging to the same category |
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| outdir | **out**, any path | Output directory |
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Bold words are default values.
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## Interpreting the hiveplot
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[Here](Interpretation)
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See *Interpretation.html* in the **help** folder
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## References
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... | ... | |