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[*Back to home*](../Home.md)
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*Previous: [The inputs](inputs.md)*
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# Running the pipeline
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## The configuration file
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The first task before running the pipeline is to create a **configuration file** in the json format. This task can be performed with the help of the python script in "SCRIPTS/make_srp_config.py"
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<div style="text-align: right">
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<i>Next: <a href="../analysis/primary_analysis.md">The primary analysis</a></i>
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</div> |
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