... | ... | @@ -3,7 +3,7 @@ |
|
|
|
|
|
# Tertiary analysis
|
|
|
|
|
|
The tertiary analysis is about making sence of the lists of gene differentially expressed between conditions found. It is by far the most difficult and time consuming part of an analysis. The pipeline gives you insights on your data by using some of the numerous tools that exist.
|
|
|
The tertiary analysis is about making sense of the lists of gene differentially expressed between conditions found. It is by far the most difficult and time consuming part of an analysis. The pipeline gives you insights on your data by using some of the numerous tools that exist.
|
|
|
|
|
|
The R package **ClusterProfiler** enables to perform over-representation (ORA) and enrichment (GSEA) analysis. The R script located at "SCRIPTS/DE/annot.R" uses this packages to annotate the list of genes found in the [secondary analysis](analysis/secondary_analysis). It writes multiple files:
|
|
|
|
... | ... | @@ -22,4 +22,4 @@ String-DB will display the interactions between proteins coded by the differenti |
|
|
<div align="right">
|
|
|
|
|
|
<i>Next: <a href="analysis/report">The report</a></i>
|
|
|
</div> |
|
|
\ No newline at end of file |
|
|
</div> |