fixed bug - tables disappearing when no samples filtered

SCRIPTS/make_html.py

@@ -141,8 +141,10 @@ if(project in config["comparisons"]):
 			s["totalGenEx"] = int(ls[1])
 			s["totalCounts"] = int(ls[2])
 			sList.append(s)
+
+	templateVars["project"]["filteredSamples"] = sList
 	if(sList):
-		templateVars["project"]["filteredSamples"] = sList
+		templateVars["project"]["filteredExists"] = True
 
 # Selection of versus conditions
 conditionVS = list()

TEMPLATE/index_SA.html

@@ -180,7 +180,7 @@
 						<li>Samples must express at least <u>{{project.minGenes}}</u> genes</li>
 						<li>Samples must have at least <u>{{project.minReads}}</u> reads assigned</li>
 					</ul> 
-					{% if project.filteredSamples is defined %}
+					{% if project.filteredExists is defined %}
 						<p>Samples filtered out for this analysis:</p>
 						<table id="filtered_samples" class="display compact" style="width:100%">
 							<thead>
@@ -260,8 +260,9 @@
 			    					</tr>
 							</thead>
 	      						</table>
-							</div>
+							</div>
 							</br></br>
+							<a href="./{{config.de_folder}}/{{i.condition1}}__vs__{{i.condition2}}/DEseqResFiltered.tsv">Download DEG deseq2 results table</a><br/>
 							<a href="./{{config.de_folder}}/{{i.condition1}}__vs__{{i.condition2}}/DEseqRes.tsv">Download full deseq2 results table</a><br/>
 							<script>
 								$(document).ready(function() {
@@ -299,7 +300,8 @@
 						<h2 id="deseqreslinks">Deseq2 results</h2>
 					</header>
 					{# DESeqRes files display #}
-					{% for c in conditionVS %}
+					{% for c in conditionVS %}
+					<a href="./{{config.de_folder}}/{{c.condition1}}__vs__{{c.condition2}}/DEseqResFiltered.tsv">{{c.condition1}} vs {{c.condition2}} Download DEG deseq2 results table</a><br/>
 					<a href="./{{config.de_folder}}/{{c.condition1}}__vs__{{c.condition2}}/DEseqRes.tsv">{{c.condition1}} vs {{c.condition2}} Full deseq2 results table</a><br/>	
 					{% endfor %}				
 					<HR align="center" size="6" width="100%">

TEMPLATE/index_SAwoComp.html

@@ -169,7 +169,7 @@
 						<li>Samples must express at least <u>{{project.minGenes}}</u> genes</li>
 						<li>Samples must have at least <u>{{project.minReads}}</u> reads assigned</li>
 					</ul> 
-					{% if project.filteredSamples is defined %}
+					{% if project.filteredExists is defined %}
 						<p>Samples filtered out for this analysis:</p>
 						<table id="filtered_samples" class="display compact" style="width:100%">
 							<thead>