single binning is back

magneto/Snakefile

@@ -13,8 +13,10 @@ from snakemake.logging import logger
 # Owned
 import scripts.parserconfig as conf
 import scripts.cmdparser as cmdparser
-
-ruleorder: binning_mapping > bowtie2_map
+if config["Binning"]["strategies"] == "SASB" or config["Binning"]["strategies"] == "CASB" :
+    ruleorder: binning_mapping_SB > bowtie2_map
+if config["Binning"]["strategies"] == "SACB" or config["Binning"]["strategies"] == "CACB" :
+    ruleorder: binning_mapping_CB > bowtie2_map
 #########################################################################
 # conf.parse (see scripts.parserconfig.py) help to parse the config file
 #    reads2use : dictionnary with samples names as keys and list of path