One of the required R library (*qualpar*) is not included in the conda environment, you must install it manually. Once the the environment is installed, activate it:
One of the required R library (*qualpalr*) is not included in the conda environment, you must install it manually. Once the the environment is installed, activate it:
~~~
conda activate BulkRNAseq
~~~
Open a R session, and install qualpar with BiocManager:
Open a R session, and install qualpalr with BiocManager:
~~~
BiocManager::install("qualpar")
BiocManager::install("qualpalr",update = FALSE)
~~~
4. Change all necessary parameters in the *Configuration of parameters* section in the script *BulkRNAseq.R*.