- 22 Sep, 2021 3 commits
-
-
Adrien FOUCAL authored
-
Adrien FOUCAL authored
-
Adrien FOUCAL authored
-
- 21 Sep, 2021 1 commit
-
-
Adrien FOUCAL authored
-
- 17 Sep, 2021 1 commit
-
-
Adrien FOUCAL authored
-
- 16 Sep, 2021 1 commit
-
-
Adrien FOUCAL authored
-
- 15 Sep, 2021 2 commits
-
-
Adrien FOUCAL authored
-
Adrien FOUCAL authored
-
- 14 Sep, 2021 1 commit
-
-
Adrien FOUCAL authored
-
- 10 Sep, 2021 2 commits
-
-
Adrien FOUCAL authored
-
Adrien FOUCAL authored
-
- 09 Sep, 2021 1 commit
-
-
Adrien FOUCAL authored
-
- 08 Sep, 2021 1 commit
-
-
Adrien FOUCAL authored
-
- 31 Aug, 2021 1 commit
-
-
Adrien FOUCAL authored
-
- 30 Aug, 2021 1 commit
-
-
Adrien FOUCAL authored
-
- 05 Aug, 2021 1 commit
-
-
- 04 Aug, 2021 1 commit
-
-
Adrien FOUCAL authored
-
- 29 Jul, 2021 1 commit
-
-
Adrien FOUCAL authored
-
- 23 Jul, 2021 1 commit
-
-
Adrien FOUCAL authored
-
- 22 Jul, 2021 3 commits
-
-
Adrien FOUCAL authored
-
-
Adrien FOUCAL authored
Proper handling of SEACR QC. Still some errors due to SEACR removal of temp files. Snakemake just need to be rerun
-
- 01 Jul, 2021 1 commit
-
-
Adrien FOUCAL authored
-
- 17 Jun, 2021 1 commit
-
-
Adrien FOUCAL authored
-
- 14 Jun, 2021 1 commit
-
-
Adrien FOUCAL authored
-
- 31 May, 2021 2 commits
-
-
-
Adrien FOUCAL authored
ine working version of the pipeline, with still peak_calling being tough to parametrize for CUT&RUN
-
- 30 Apr, 2021 1 commit
-
-
Adrien FOUCAL authored
-
- 28 Apr, 2021 1 commit
-
-
Adrien FOUCAL authored
-
- 22 Apr, 2021 1 commit
-
-
Adrien FOUCAL authored
-
- 21 Apr, 2021 2 commits
-
-
Adrien FOUCAL authored
-
Adrien FOUCAL authored
-
- 12 Mar, 2021 1 commit
-
-
Adrien FOUCAL authored
No more errors. Still weird peaks calling results, due to perhaps difficulty for macs to estimate fragment length with CUT&RUn data
-
- 04 Mar, 2021 1 commit
-
-
Adrien FOUCAL authored
Updating the multibigwig command to focus on chr1 to cut computing time. Also removing useless grouping per samples, since all deptools plots are now in the multiQC
-
- 28 Feb, 2021 1 commit
-
-
Adrien FOUCAL authored
Commenting cutrunsamples since not used yet and adding some check if there is no control at all in the samples
-
- 23 Feb, 2021 1 commit
-
-
Adrien FOUCAL authored
Working version of the pipeline, properly handling different peak calling strategies based on paired/single end data
-
- 19 Feb, 2021 1 commit
-
-
Adrien FOUCAL authored
Remaking call peaks to handle both samples that are paire end and with or whitout control, sugina mi of input fonctions and params magic to alter the command line provided in the shell. Lots of things to do still
-
- 12 Feb, 2021 1 commit
-
-
Adrien FOUCAL authored
-
- 04 Feb, 2021 2 commits
-
-
Adrien FOUCAL authored
Adding CUTRUN and PROPER CONTROl dict. No obvious errors before correcting some helerp functions and wildcards functions
-
Adrien FOUCAL authored
-