config.yaml 502 Bytes
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idx_bt1: /scratch/genomic_med/apps/annot/indexes/bowtie/hg19
macs_g: hs
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macs_pvalue: 1e-5
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macs2_g: hs
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macs2_pvalue: 1e-5
macs2_pvalue_broad: 1e-5
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#superEnhancer genome
rose_g: hg19

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#number of reads downsample to, I set to 50 million, if reads number smaller than 
## 50 million, downsample will keep the orignal reads
target_reads: 50000000
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# Path to a JSON file with samples and their corresponding FASTQ files.
SAMPLES: './SRR.txt'
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SAMPLES_JSON: './samples.json'
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CLUSTER_JSON: './cluster.json'