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R functions that provide utilities for RNA-Seq analyses.

Scripts for single cell analysis in "Mesenchymal-derived endothelial cells promote human PSC-derived organoid development in vivo"

Scripts used to pre-process fastq and run dada2 on TARA data

Snakemake for 3' Sequencing RNA Profiling analysis. https://bio.tools/3SRP

This pipeline aims to provide unsupervised data analysis from Singlecell RNAseq data. The alignment is done with Tophat2 followed by htseqcount. After filtering, DeSeq2 and Vst are applied. Finally, the unsupervised analysis is done with WGCNA.