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Toolbox for secondary analysis after using MicroSysMics https://gitlab.univ-nantes.fr/bird_pipeline_registry/microSysMics

Microbiome analysis

RNAseq pipeline for gene expression quantification.

Atlant-Eco Network Analysis repository

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

Get ChEBI ids present in given specie(s). Those scripts were developed during the Hackathon MoDaL Biogenouest 2021 https://biogenouest.github.io/biogen-hack-2020/M2A.html

Bulk RNA-seq secondary analysis workflow

RNAseq pipeline for gene expression quantification.

Scripts used to pre-process fastq and run dada2 on TARA data

R functions that provide utilities for RNA-Seq analyses.