...
 
Commits (12)
......@@ -68,6 +68,13 @@
},
"quality-filter" : {
"type" : "object"
},
"ancom": {
"type": "object",
"properties": {
"m-metadata-column" : { "type": "string" }
},
"required": ["m-metadata-column"]
}
},
"required": ["global"],
......
This diff is collapsed.
name : microSysMics
dependencies :
- bioconda::snakemake=3.11.2
- pandas=0.19.2
- bioconda::snakemake
- pandas
- python-dateutil
- conda-forge::gitpython
- jsonschema
channels:
- qiime2/label/r2019.1
- qiime2/label/r2019.4
- conda-forge
- bioconda
- defaults
- conda-forge/label/gcc7
dependencies:
- _r-mutex=1.0.0
- arb-bio-tools=6.0.6
- asn1crypto=0.24.0
- atk=2.25.90
- atomicwrites=1.2.1
- attrs=18.2.0
- atomicwrites=1.3.0
- attrs=19.1.0
- backcall=0.1.0
- bibtexparser=1.1.0
- bioconductor-biobase=2.38.0
- bioconductor-biocgenerics=0.24.0
- bioconductor-biocparallel=1.12.0
- bioconductor-biostrings=2.46.0
- bioconductor-dada2=1.6.0
- bioconductor-delayedarray=0.4.1
- bioconductor-genomeinfodb=1.14.0
- bioconductor-genomeinfodbdata=1.0.0
- bioconductor-genomicalignments=1.14.1
- bioconductor-genomicranges=1.30.3
- bioconductor-iranges=2.12.0
- bioconductor-rsamtools=1.30.0
- bioconductor-s4vectors=0.16.0
- bioconductor-shortread=1.36.0
- bioconductor-summarizedexperiment=1.8.0
- bioconductor-xvector=0.18.0
- bioconductor-zlibbioc=1.24.0
- binutils_impl_linux-64=2.31.1
- binutils_linux-64=2.31.1
- bioconductor-biobase=2.42.0
- bioconductor-biocgenerics=0.28.0
- bioconductor-biocparallel=1.16.6
- bioconductor-biostrings=2.50.2
- bioconductor-dada2=1.10.0
- bioconductor-delayedarray=0.8.0
- bioconductor-genomeinfodb=1.18.1
- bioconductor-genomeinfodbdata=1.2.0
- bioconductor-genomicalignments=1.18.1
- bioconductor-genomicranges=1.34.0
- bioconductor-iranges=2.16.0
- bioconductor-rsamtools=1.34.0
- bioconductor-s4vectors=0.20.1
- bioconductor-shortread=1.40.0
- bioconductor-summarizedexperiment=1.12.0
- bioconductor-xvector=0.22.0
- bioconductor-zlibbioc=1.28.0
- biom-format=2.1.7
- blas=1.0
- blas=1.1
- blast=2.7.1
- bleach=3.1.0
- bokeh=1.0.4
- bokeh=1.1.0
- boost=1.67.0
- boost-cpp=1.67.0
- bwidget=1.9.11
- bz2file=0.98
- bzip2=1.0.6
- ca-certificates=2018.11.29
- ca-certificates=2019.3.9
- cachecontrol=0.12.5
- cairo=1.14.12
- certifi=2018.11.29
- cffi=1.11.5
- cairo=1.16.0
- certifi=2019.3.9
- cffi=1.12.3
- chardet=3.0.4
- click=7.0
- cryptography=2.3.1
- curl=7.61.0
- cutadapt=1.18
- cryptography=2.6.1
- curl=7.64.1
- cutadapt=2.3
- cycler=0.10.0
- dbus=1.13.0
- dbus=1.13.6
- deblur=1.1.0
- decorator=4.3.2
- emperor=1.0.0beta18
- decorator=4.4.0
- defusedxml=0.5.0
- dnaio=0.3
- emperor=1.0.0b19
- entrypoints=0.3
- expat=2.2.5
- fastcluster=1.1.25
- fasttree=2.1.10
- fontconfig=2.13.1
- freetype=2.9.1
- freetype=2.10.0
- future=0.17.1
- gdk-pixbuf=2.36.12
- gcc_impl_linux-64=7.3.0
- gcc_linux-64=7.3.0
- gettext=0.19.8.1
- glib=2.56.2
- gfortran_impl_linux-64=7.3.0
- gfortran_linux-64=7.3.0
- glib=2.58.3
- gmp=6.1.2
- gneiss=0.4.4
- gnutls=3.5.19
- gobject-introspection=1.56.1
- graphite2=1.3.13
- gsl=2.2.1
- gstreamer=1.12.5
- gtk2=2.24.31
- gsl=2.4
- gst-plugins-base=1.14.4
- gstreamer=1.14.4
- gxx_impl_linux-64=7.3.0
- gxx_linux-64=7.3.0
- h5py=2.9.0
- harfbuzz=1.9.0
- harfbuzz=2.4.0
- hdf5=1.10.4
- hdmedians=0.13
- icu=58.2
- idna=2.8
- ijson=2.3
- intel-openmp=2019.1
- ipykernel=5.1.0
- ipython=7.2.0
- ipython=7.5.0
- ipython_genutils=0.2.0
- ipywidgets=7.4.2
- iqtree=1.6.9
- jedi=0.13.2
- jinja2=2.10
- iqtree=1.6.10
- jedi=0.13.3
- jinja2=2.10.1
- jpeg=9c
- jsonschema=3.0.0a3
- jsonschema=3.0.1
- jupyter_client=5.2.4
- jupyter_core=4.4.0
- kiwisolver=1.0.1
- krb5=1.14.6
- kiwisolver=1.1.0
- krb5=1.16.3
- libarbdb=6.0.6
- libcurl=7.61.1
- libcurl=7.64.1
- libedit=3.1.20170329
- libffi=3.2.1
- libgcc=7.2.0
- libgcc-ng=7.3.0
- libgfortran=3.0.0
- libgfortran-ng=7.2.0
- libgcc-ng=8.2.0
- libgfortran-ng=7.3.0
- libiconv=1.15
- libpng=1.6.36
- libidn2=2.1.1
- libpng=1.6.37
- libsodium=1.0.16
- libssh2=1.8.0
- libstdcxx-ng=7.3.0
- libssh2=1.8.2
- libstdcxx-ng=8.2.0
- libtiff=4.0.10
- libunistring=0.9.10
- libuuid=2.32.1
- libxcb=1.13
- libxml2=2.9.8
- libxml2=2.9.9
- lockfile=0.12.2
- mafft=7.310
- markupsafe=1.1.0
- matplotlib=3.0.2
- matplotlib-base=3.0.2
- make=4.2.1
- markupsafe=1.1.1
- matplotlib=3.0.3
- matplotlib-base=3.0.3
- mistune=0.8.4
- mkl=2019.1
- mkl_fft=1.0.10
- mkl_random=1.0.2
- more-itertools=4.3.0
- msgpack-python=0.6.1
- natsort=5.5.0
- nbconvert=5.3.1
- natsort=6.0.0
- nbconvert=5.5.0
- nbformat=4.4.0
- ncurses=6.1
- nettle=3.3
- networkx=2.3
- nose=1.3.7
- notebook=5.7.4
- numpy=1.15.4
- numpy-base=1.15.4
- notebook=5.7.8
- numpy=1.16.2
- olefile=0.46
- openblas=0.3.3
- openjdk=11.0.1
- openssl=1.0.2p
- openssl=1.1.1b
- packaging=19.0
- pandas=0.23.4
- pandoc=2.5
- pandas=0.24.2
- pandoc=2.7.2
- pandocfilters=1.4.2
- pango=1.40.14
- parso=0.3.2
- parso=0.4.0
- patsy=0.5.1
- pcre=8.41
- perl=5.26.2
- perl-archive-tar=2.32
- perl-carp=1.38
- perl-compress-raw-bzip2=2.084
- perl-compress-raw-zlib=2.084
- perl-compress-raw-bzip2=2.086
- perl-compress-raw-zlib=2.086
- perl-exporter=5.72
- perl-exporter-tiny=1.002001
- perl-extutils-makemaker=7.34
- perl-io-compress=2.084
- perl-extutils-makemaker=7.36
- perl-io-compress=2.086
- perl-io-zlib=1.10
- perl-list-moreutils=0.428
- perl-list-moreutils-xs=0.428
- perl-pathtools=3.73
- perl-pathtools=3.75
- perl-scalar-list-utils=1.45
- perl-test-more=1.001002
- perl-xsloader=0.24
- pexpect=4.6.0
- pexpect=4.7.0
- pickleshare=0.7.5
- pigz=2.3.4
- pillow=5.4.1
- pip=19.0.1
- pillow=6.0.0
- pip=19.1
- pixman=0.34.0
- pluggy=0.8.1
- prometheus_client=0.5.0
- prompt_toolkit=2.0.8
- psutil=5.4.8
- pluggy=0.11.0
- prometheus_client=0.6.0
- prompt_toolkit=2.0.9
- psutil=5.6.2
- pthread-stubs=0.4
- ptyprocess=0.6.0
- py=1.7.0
- py=1.8.0
- pycparser=2.19
- pygments=2.3.1
- pyopenssl=18.0.0
- pygments=2.4.0
- pyopenssl=19.0.0
- pyparsing=2.3.0
- pyqt=5.6.0
- pyrsistent=0.14.9
- pyqt=5.9.2
- pyrsistent=0.15.1
- pysocks=1.6.8
- pytest=4.1.1
- pytest=4.4.2
- python=3.6.7
- python-dateutil=2.7.5
- pytz=2018.9
- pyyaml=3.13
- pyzmq=17.1.2
- q2-alignment=2019.1.0
- q2-composition=2019.1.0
- q2-cutadapt=2019.1.0
- q2-dada2=2019.1.0
- q2-deblur=2019.1.0
- q2-demux=2019.1.0
- q2-diversity=2019.1.0
- q2-emperor=2019.1.0
- q2-feature-classifier=2019.1.0
- q2-feature-table=2019.1.0
- q2-fragment-insertion=2019.1.0
- q2-gneiss=2019.1.0
- q2-longitudinal=2019.1.0
- q2-metadata=2019.1.0
- q2-phylogeny=2019.1.0
- q2-quality-control=2019.1.0
- q2-quality-filter=2019.1.0
- q2-sample-classifier=2019.1.0
- q2-taxa=2019.1.0
- q2-types=2019.1.0
- q2-vsearch=2019.1.0
- q2cli=2019.1.0
- q2templates=2019.1.0
- qiime2=2019.1.0
- qt=5.6.2
- r-assertthat=0.2.0
- r-base=3.4.1
- r-bh=1.66.0_1
- python-dateutil=2.8.0
- pytz=2019.1
- pyyaml=5.1
- pyzmq=18.0.1
- q2-alignment=2019.4.0
- q2-composition=2019.4.0
- q2-cutadapt=2019.4.0
- q2-dada2=2019.4.0
- q2-deblur=2019.4.0
- q2-demux=2019.4.1
- q2-diversity=2019.4.0
- q2-emperor=2019.4.0
- q2-feature-classifier=2019.4.0
- q2-feature-table=2019.4.0
- q2-fragment-insertion=2019.4.0
- q2-gneiss=2019.4.0
- q2-longitudinal=2019.4.0
- q2-metadata=2019.4.0
- q2-phylogeny=2019.4.0
- q2-quality-control=2019.4.0
- q2-quality-filter=2019.4.0
- q2-sample-classifier=2019.4.0
- q2-taxa=2019.4.0
- q2-types=2019.4.1
- q2-vsearch=2019.4.0
- q2cli=2019.4.0
- q2templates=2019.4.0
- qiime2=2019.4.0
- qt=5.9.7
- r-assertthat=0.2.1
- r-base=3.5.1
- r-bh=1.69.0_1
- r-bitops=1.0_6
- r-cli=1.0.0
- r-cluster=2.0.7_1
- r-colorspace=1.3_2
- r-cli=1.1.0
- r-cluster=2.0.9
- r-colorspace=1.4_1
- r-crayon=1.3.4
- r-data.table=1.11.4
- r-data.table=1.12.2
- r-digest=0.6.18
- r-fansi=0.3.0
- r-formatr=1.5
- r-fansi=0.4.0
- r-formatr=1.6
- r-futile.logger=1.4.3
- r-futile.options=1.0.1
- r-ggplot2=3.1.0
- r-glue=1.3.0
- r-gtable=0.2.0
- r-ggplot2=3.1.1
- r-glue=1.3.1
- r-gtable=0.3.0
- r-hwriter=1.3.2
- r-labeling=0.3
- r-lambda.r=1.2.3
- r-lattice=0.20_35
- r-lattice=0.20_38
- r-latticeextra=0.6_28
- r-lazyeval=0.2.1
- r-lazyeval=0.2.2
- r-magrittr=1.5
- r-mass=7.3_50
- r-matrix=1.2_14
- r-mass=7.3_51.4
- r-matrix=1.2_17
- r-matrixstats=0.54.0
- r-mgcv=1.8_24
- r-mgcv=1.8_28
- r-munsell=0.5.0
- r-nlme=3.1_137
- r-permute=0.9_4
- r-pillar=1.3.0
- r-nlme=3.1_139
- r-permute=0.9_5
- r-pillar=1.3.1
- r-pkgconfig=2.0.2
- r-plyr=1.8.4
- r-r6=2.2.2
- r-r6=2.4.0
- r-rcolorbrewer=1.1_2
- r-rcpp=1.0.0
- r-rcppparallel=4.4.1
- r-rcurl=1.95_4.11
- r-rcpp=1.0.1
- r-rcppparallel=4.4.2
- r-rcurl=1.95_4.12
- r-reshape2=1.4.3
- r-rlang=0.3.0.1
- r-rlang=0.3.4
- r-scales=1.0.0
- r-snow=0.4_3
- r-stringi=1.2.4
- r-stringr=1.3.1
- r-tibble=1.4.2
- r-stringi=1.4.3
- r-stringr=1.4.0
- r-tibble=2.1.1
- r-utf8=1.1.4
- r-vegan=2.5_3
- r-vegan=2.5_4
- r-viridislite=0.3.0
- r-withr=2.1.2
- raxml=8.2.12
......@@ -260,45 +269,45 @@ dependencies:
- requests=2.21.0
- scikit-bio=0.5.5
- scikit-learn=0.20.2
- scipy=1.2.0
- scipy=1.2.1
- seaborn=0.9.0
- send2trash=1.5.0
- setuptools=40.7.1
- setuptools=41.0.1
- sina=1.4.0
- sip=4.18.1
- sip=4.19.8
- six=1.12.0
- sortmerna=2.0
- sqlite=3.26.0
- sqlite=3.28.0
- statsmodels=0.9.0
- tbb=2019.3
- terminado=0.8.1
- tbb=2019.6
- terminado=0.8.2
- testpath=0.4.2
- tk=8.6.9
- tornado=5.1.1
- tktable=2.10
- tornado=6.0.2
- traitlets=4.3.2
- tzlocal=1.5.1
- unifrac=0.9.3
- urllib3=1.24.1
- urllib3=1.24.2
- vsearch=2.7.0
- wcwidth=0.1.7
- webencodings=0.5.1
- wget=1.19.5
- wheel=0.32.3
- wget=1.20.1
- wheel=0.33.1
- widgetsnbextension=3.4.2
- xopen=0.4.1
- xopen=0.5.1
- xorg-kbproto=1.0.7
- xorg-libice=1.0.9
- xorg-libsm=1.2.3
- xorg-libx11=1.6.6
- xorg-libxau=1.0.8
- xorg-libxdmcp=1.1.2
- xorg-libxext=1.3.3
- xorg-libx11=1.6.7
- xorg-libxau=1.0.9
- xorg-libxdmcp=1.1.3
- xorg-libxext=1.3.4
- xorg-libxrender=0.9.10
- xorg-libxt=1.1.5
- xorg-renderproto=0.11.1
- xorg-xextproto=7.3.0
- xorg-xproto=7.0.31
- xz=5.2.4
- yaml=0.1.7
- zeromq=4.2.5
- zeromq=4.3.1
- zlib=1.2.11
channels:
- qiime2/label/r2019.1
- qiime2/label/r2019.4
- conda-forge
- bioconda
- defaults
- conda-forge/label/gcc7
dependencies:
- _r-mutex=1.0.0
- appnope=0.1.0
- arb-bio-tools=6.0.6
- asn1crypto=0.24.0
- atomicwrites=1.2.1
- attrs=18.2.0
- atomicwrites=1.3.0
- attrs=19.1.0
- backcall=0.1.0
- bibtexparser=1.1.0
- bioconductor-biobase=2.38.0
- bioconductor-biocgenerics=0.24.0
- bioconductor-biocparallel=1.12.0
- bioconductor-biostrings=2.46.0
- bioconductor-dada2=1.6.0
- bioconductor-delayedarray=0.4.1
- bioconductor-genomeinfodb=1.14.0
- bioconductor-genomeinfodbdata=1.0.0
- bioconductor-genomicalignments=1.14.1
- bioconductor-genomicranges=1.30.3
- bioconductor-iranges=2.12.0
- bioconductor-rsamtools=1.30.0
- bioconductor-s4vectors=0.16.0
- bioconductor-shortread=1.36.0
- bioconductor-summarizedexperiment=1.8.0
- bioconductor-xvector=0.18.0
- bioconductor-zlibbioc=1.24.0
- bioconductor-biobase=2.42.0
- bioconductor-biocgenerics=0.28.0
- bioconductor-biocparallel=1.16.6
- bioconductor-biostrings=2.50.2
- bioconductor-dada2=1.10.0
- bioconductor-delayedarray=0.8.0
- bioconductor-genomeinfodb=1.18.1
- bioconductor-genomeinfodbdata=1.2.0
- bioconductor-genomicalignments=1.18.1
- bioconductor-genomicranges=1.34.0
- bioconductor-iranges=2.16.0
- bioconductor-rsamtools=1.34.0
- bioconductor-s4vectors=0.20.1
- bioconductor-shortread=1.40.0
- bioconductor-summarizedexperiment=1.12.0
- bioconductor-xvector=0.22.0
- bioconductor-zlibbioc=1.28.0
- biom-format=2.1.7
- blas=1.0
- blas=1.1
- blast=2.6.0
- bleach=3.1.0
- bokeh=1.0.4
- bokeh=1.1.0
- boost=1.67.0
- boost-cpp=1.67.0
- bwidget=1.9.11
- bz2file=0.98
- bzip2=1.0.6
- ca-certificates=2018.11.29
- ca-certificates=2019.3.9
- cachecontrol=0.12.5
- cairo=1.14.12
- certifi=2018.11.29
- cffi=1.11.5
- certifi=2019.3.9
- cffi=1.12.3
- chardet=3.0.4
- click=7.0
- cryptography=2.3.1
- curl=7.63.0
- cutadapt=1.18
- cryptography=2.6.1
- curl=7.64.1
- cutadapt=2.3
- cycler=0.10.0
- deblur=1.1.0
- decorator=4.3.2
- emperor=1.0.0beta18
- decorator=4.4.0
- defusedxml=0.5.0
- dnaio=0.3
- emperor=1.0.0b19
- entrypoints=0.3
- fastcluster=1.1.25
- fasttree=2.1.10
- fontconfig=2.13.1
- freetype=2.9.1
- freetype=2.10.0
- future=0.17.1
- gettext=0.19.8.1
- glib=2.55.0
- glib=2.56.2
- gneiss=0.4.4
- graphite2=1.3.13
- gsl=2.1
- gsl=2.2.1
- h5py=2.9.0
- harfbuzz=1.9.0
- hdf5=1.10.4
......@@ -70,159 +74,162 @@ dependencies:
- icu=58.2
- idna=2.8
- ijson=2.3
- intel-openmp=2019.1
- ipykernel=5.1.0
- ipython=7.2.0
- ipython=7.5.0
- ipython_genutils=0.2.0
- ipywidgets=7.4.2
- iqtree=1.6.9
- jedi=0.13.2
- jinja2=2.10
- iqtree=1.6.10
- jedi=0.13.3
- jinja2=2.10.1
- jpeg=9c
- jsonschema=3.0.0a3
- jsonschema=3.0.1
- jupyter_client=5.2.4
- jupyter_core=4.4.0
- kiwisolver=1.0.1
- kiwisolver=1.1.0
- krb5=1.16.3
- libarbdb=6.0.6
- libcurl=7.63.0
- libcxx=4.0.1
- libcurl=7.64.1
- libcxx=8.0.0
- libcxxabi=8.0.0
- libedit=3.1.20170329
- libffi=3.2.1
- libgcc=4.8.5
- libgfortran=3.0.1
- libiconv=1.15
- libpng=1.6.34
- libidn2=2.1.1
- libpng=1.6.37
- libsodium=1.0.16
- libssh2=1.8.0
- libtiff=4.0.9
- libxml2=2.9.8
- llvm-meta=7.0.0
- libssh2=1.8.2
- libtiff=4.0.10
- libunistring=0.9.10
- libxml2=2.9.9
- llvm-openmp=8.0.0
- lockfile=0.12.2
- mafft=7.310
- markupsafe=1.1.0
- matplotlib=2.2.3
- make=4.2.1
- markupsafe=1.1.1
- matplotlib=3.0.3
- matplotlib-base=3.0.3
- mistune=0.8.4
- mkl=2019.1
- mkl_fft=1.0.10
- mkl_random=1.0.2
- more-itertools=4.3.0
- msgpack-python=0.6.1
- natsort=5.5.0
- nbconvert=5.3.1
- natsort=6.0.0
- nbconvert=5.5.0
- nbformat=4.4.0
- ncurses=5.9
- ncurses=6.1
- networkx=2.3
- nose=1.3.7
- notebook=5.7.4
- numpy=1.15.4
- numpy-base=1.15.4
- notebook=5.7.8
- numpy=1.16.2
- olefile=0.46
- openblas=0.3.3
- openjdk=11.0.1
- openmp=7.0.0
- openssl=1.0.2p
- openmp=8.0.0
- openssl=1.1.1b
- packaging=19.0
- pandas=0.23.4
- pandoc=2.5
- pandas=0.24.2
- pandoc=2.7.2
- pandocfilters=1.4.2
- pango=1.40.14
- parso=0.3.2
- parso=0.4.0
- patsy=0.5.1
- pcre=8.39
- pexpect=4.6.0
- pcre=8.41
- pexpect=4.7.0
- pickleshare=0.7.5
- pigz=2.3.4
- pillow=5.4.1
- pip=19.0.1
- pillow=6.0.0
- pip=19.1
- pixman=0.34.0
- pluggy=0.8.1
- prometheus_client=0.5.0
- prompt_toolkit=2.0.8
- psutil=5.4.8
- pluggy=0.11.0
- prometheus_client=0.6.0
- prompt_toolkit=2.0.9
- psutil=5.6.2
- ptyprocess=0.6.0
- py=1.7.0
- py=1.8.0
- pycparser=2.19
- pygments=2.3.1
- pyopenssl=18.0.0
- pygments=2.4.0
- pyopenssl=19.0.0
- pyparsing=2.3.0
- pyrsistent=0.14.9
- pyrsistent=0.15.1
- pysocks=1.6.8
- pytest=4.1.1
- python=3.6.5
- python-dateutil=2.7.5
- pytz=2018.9
- pyyaml=3.13
- pyzmq=17.1.2
- q2-alignment=2019.1.0
- q2-composition=2019.1.0
- q2-cutadapt=2019.1.0
- q2-dada2=2019.1.0
- q2-deblur=2019.1.0
- q2-demux=2019.1.0
- q2-diversity=2019.1.0
- q2-emperor=2019.1.0
- q2-feature-classifier=2019.1.0
- q2-feature-table=2019.1.0
- q2-fragment-insertion=2019.1.0
- q2-gneiss=2019.1.0
- q2-longitudinal=2019.1.0
- q2-metadata=2019.1.0
- q2-phylogeny=2019.1.0
- q2-quality-control=2019.1.0
- q2-quality-filter=2019.1.0
- q2-sample-classifier=2019.1.0
- q2-taxa=2019.1.0
- q2-types=2019.1.0
- q2-vsearch=2019.1.0
- q2cli=2019.1.0
- q2templates=2019.1.0
- qiime2=2019.1.0
- r-assertthat=0.2.0
- r-base=3.4.1
- r-bh=1.66.0_1
- pytest=4.4.2
- python=3.6.7
- python-dateutil=2.8.0
- pytz=2019.1
- pyyaml=5.1
- pyzmq=18.0.1
- q2-alignment=2019.4.0
- q2-composition=2019.4.0
- q2-cutadapt=2019.4.0
- q2-dada2=2019.4.0
- q2-deblur=2019.4.0
- q2-demux=2019.4.1
- q2-diversity=2019.4.0
- q2-emperor=2019.4.0
- q2-feature-classifier=2019.4.0
- q2-feature-table=2019.4.0
- q2-fragment-insertion=2019.4.0
- q2-gneiss=2019.4.0
- q2-longitudinal=2019.4.0
- q2-metadata=2019.4.0
- q2-phylogeny=2019.4.0
- q2-quality-control=2019.4.0
- q2-quality-filter=2019.4.0
- q2-sample-classifier=2019.4.0
- q2-taxa=2019.4.0
- q2-types=2019.4.1
- q2-vsearch=2019.4.0
- q2cli=2019.4.0
- q2templates=2019.4.0
- qiime2=2019.4.0
- r-assertthat=0.2.1
- r-base=3.5.1
- r-bh=1.69.0_1
- r-bitops=1.0_6
- r-cli=1.0.0
- r-cluster=2.0.7_1
- r-colorspace=1.3_2
- r-cli=1.1.0
- r-cluster=2.0.9
- r-colorspace=1.4_1
- r-crayon=1.3.4
- r-data.table=1.11.4
- r-data.table=1.12.2
- r-digest=0.6.18
- r-fansi=0.3.0
- r-formatr=1.5
- r-fansi=0.4.0
- r-formatr=1.6
- r-futile.logger=1.4.3
- r-futile.options=1.0.1
- r-ggplot2=3.1.0
- r-glue=1.3.0
- r-gtable=0.2.0
- r-ggplot2=3.1.1
- r-glue=1.3.1
- r-gtable=0.3.0
- r-hwriter=1.3.2
- r-labeling=0.3
- r-lambda.r=1.2.3
- r-lattice=0.20_35
- r-lattice=0.20_38
- r-latticeextra=0.6_28
- r-lazyeval=0.2.1
- r-lazyeval=0.2.2
- r-magrittr=1.5
- r-mass=7.3_50
- r-matrix=1.2_14
- r-mass=7.3_51.4
- r-matrix=1.2_17
- r-matrixstats=0.54.0
- r-mgcv=1.8_24
- r-mgcv=1.8_28
- r-munsell=0.5.0
- r-nlme=3.1_137
- r-permute=0.9_4
- r-pillar=1.3.0
- r-nlme=3.1_139
- r-permute=0.9_5
- r-pillar=1.3.1
- r-pkgconfig=2.0.2
- r-plyr=1.8.4
- r-r6=2.2.2
- r-r6=2.4.0
- r-rcolorbrewer=1.1_2
- r-rcpp=1.0.0
- r-rcppparallel=4.4.1
- r-rcurl=1.95_4.11
- r-rcpp=1.0.1
- r-rcppparallel=4.4.2
- r-rcurl=1.95_4.12
- r-reshape2=1.4.3
- r-rlang=0.3.0.1
- r-rlang=0.3.4
- r-scales=1.0.0
- r-snow=0.4_3
- r-stringi=1.2.4
- r-stringr=1.3.1
- r-tibble=1.4.2
- r-stringi=1.4.3
- r-stringr=1.4.0
- r-tibble=2.1.1
- r-utf8=1.1.4
- r-vegan=2.5_3
- r-vegan=2.5_4
- r-viridislite=0.3.0
- r-withr=2.1.2
- raxml=8.2.12
......@@ -230,32 +237,33 @@ dependencies:
- requests=2.21.0
- scikit-bio=0.5.5
- scikit-learn=0.20.2
- scipy=1.2.0
- scipy=1.2.1
- seaborn=0.9.0
- send2trash=1.5.0
- setuptools=40.7.1
- setuptools=41.0.1
- sina=1.4.0
- six=1.12.0
- sortmerna=2.0
- sqlite=3.20.1
- sqlite=3.28.0
- statsmodels=0.9.0
- tbb=2019.3
- terminado=0.8.1
- tbb=2019.4
- terminado=0.8.2
- testpath=0.4.2
- tk=8.6.9
- tornado=5.1.1
- tktable=2.10
- tornado=6.0.2
- traitlets=4.3.2
- tzlocal=1.5.1
- unifrac=0.9.3
- urllib3=1.24.1
- urllib3=1.24.2
- vsearch=2.7.0
- wcwidth=0.1.7
- webencodings=0.5.1
- wget=1.19.5
- wheel=0.32.3
- wget=1.20.1
- wheel=0.33.1
- widgetsnbextension=3.4.2
- xopen=0.4.1
- xopen=0.5.1
- xz=5.2.4
- yaml=0.1.7
- zeromq=4.2.5
- zeromq=4.3.1
- zlib=1.2.11
#SampleID Category Day Period
#q2:types categorical categorical categorical
F3D0 F3 0 first
F3D1 F3 1 first
F3D2 F3 2 first
F3D3 F3 3 first
F3D5 F3 5 first
F3D6 F3 6 first
F3D7 F3 7 first
F3D8 F3 8 first
F3D9 F3 9 first
F3D141 F3 141 second
F3D142 F3 142 second
F3D143 F3 143 second
F3D144 F3 144 second
F3D145 F3 145 second
F3D146 F3 146 second
F3D147 F3 147 second
F3D148 F3 148 second
F3D149 F3 149 second
F3D150 F3 150 second
Mock Mock NA NA
#SampleID time dpw
#q2:types categorical numeric
F3D0 Early 0
F3D1 Early 1
F3D2 Early 2
F3D3 Early 3
F3D5 Early 5
F3D6 Early 6
F3D7 Early 7
F3D8 Early 8
F3D9 Early 9
F3D141 Late 141
F3D142 Late 142
F3D143 Late 143
F3D144 Late 144
F3D145 Late 145
F3D146 Late 146
F3D147 Late 147
F3D148 Late 148
F3D149 Late 149
F3D150 Late 150
......@@ -37,5 +37,3 @@ F3D8,test/fastq/F3D8_S196_L001_R1_001.fastq.gz,forward
F3D8,test/fastq/F3D8_S196_L001_R2_001.fastq.gz,reverse
F3D9,test/fastq/F3D9_S197_L001_R1_001.fastq.gz,forward
F3D9,test/fastq/F3D9_S197_L001_R2_001.fastq.gz,reverse
Mock,test/fastq/Mock_S280_L001_R2_001.fastq.gz,reverse
Mock,test/fastq/Mock_S280_L001_R1_001.fastq.gz,forward