Commits · 65b247e13bb1badf3c2e184301f998056a5d4d12 · bird_pipeline_registry / microSysMics · GitLab

15 Mar, 2021 2 commits
- Merge branch 'develop' of gitlab.univ-nantes.fr:bird_pipeline_registry/microSysMics into develop · 65b247e1
  Erwan DELAGE authored Mar 15, 2021
  
  65b247e1
- Add hidden configuration file in output directory, correct bug in report · 4a723adc
  Erwan DELAGE authored Mar 15, 2021
  
  4a723adc
12 Mar, 2021 1 commit
- Evolution nb read as local rule beaucse of X11 error · 8577b0ce
  Erwan DELAGE authored Mar 12, 2021
  
  8577b0ce
11 Mar, 2021 2 commits
- Report : Add config section · 02fca5d5
  Erwan DELAGE authored Mar 11, 2021
  
  02fca5d5
- Report : deal with non found sections · 552e35de
  Erwan DELAGE authored Mar 11, 2021
  
  552e35de
10 Mar, 2021 2 commits
- Fix bug in renaming taxonomy tsv file · 8f2897b3
  Erwan DELAGE authored Mar 10, 2021
  
  8f2897b3
- Correct bug in ASV ID order, cosmetic changes · 54681b0b
  Erwan DELAGE authored Mar 10, 2021
  
  54681b0b
01 Mar, 2021 1 commit
- Add the possibility to give a percetage rather a count for the prevalence threshold · d29cc4ca
  Erwan DELAGE authored Mar 01, 2021
  
  d29cc4ca
16 Feb, 2021 3 commits
- Correct bugs in export diversity · fb4de32c
  Erwan DELAGE authored Feb 16, 2021
  
  fb4de32c
- Use os rather than subprocess to export rarefied table, bug cluster · d36aa5c5
  Erwan DELAGE authored Feb 16, 2021
  
  d36aa5c5
- Export rarefied table in BIOM and TSV format · 6d568a03
  Erwan DELAGE authored Feb 16, 2021
  
  6d568a03
05 Feb, 2021 1 commit
- Fix bug when exporting taxonomy with UNITE database · 0e00228a
  Erwan DELAGE authored Feb 05, 2021
  
  0e00228a
01 Feb, 2021 2 commits
- Merge branch 'develop' of gitlab.univ-nantes.fr:bird_pipeline_registry/microSysMics into develop · ed19ffd7
  Erwan DELAGE authored Feb 01, 2021
  
  ed19ffd7
- Add plots to visualize DESeq2 significant ASVs along with their abundance and taxonomy · d219419f
  Erwan DELAGE authored Feb 01, 2021
  
  d219419f
21 Jan, 2021 2 commits
- Fix evolution nb reads plot size · c42b5b32
  Erwan DELAGE authored Jan 21, 2021
  
  c42b5b32
- Correct arguments evolution_nbreads.py · 8cf71f2c
  Erwan DELAGE authored Jan 21, 2021
  
  8cf71f2c
19 Jan, 2021 2 commits
- Update JSON validation schema with filter_reads · e51505a1
  Erwan DELAGE authored Jan 19, 2021
  
  e51505a1
- Reference based read filtering added, read loss tracking updated (only for dada2) · 0e2c7b24
  Erwan DELAGE authored Jan 19, 2021
  
  0e2c7b24
11 Jan, 2021 1 commit
- Remplacment des EnhancedVolcano plot par les volcano interactifs de Philippe · e63b5b2d
  Erwan DELAGE authored Jan 11, 2021
  
  e63b5b2d
08 Jan, 2021 1 commit
- Ajout d'ADONIS (PERMANOVA à plusieurs facteurs) · a7e1dbde
  Erwan DELAGE authored Jan 08, 2021
  
  a7e1dbde
18 Dec, 2020 1 commit
- Amelioration de l'affichage des features sur les boxplot d'abondance différentielle · 9b6303c6
  Erwan DELAGE authored Dec 18, 2020
  
  9b6303c6
17 Dec, 2020 1 commit
- Correctif taxo · 19966210
  Erwan DELAGE authored Dec 17, 2020
  
  19966210
15 Dec, 2020 2 commits
- Merge branch 'develop' · 6381fb8f
  Erwan DELAGE authored Dec 15, 2020
  
  6381fb8f
- Correctif format taxo · 9f09e6ac
  Erwan DELAGE authored Dec 15, 2020
  
  9f09e6ac
11 Dec, 2020 4 commits
- ANCOM and DESEq2 needs taxonomy firest · ad1b7e72
  Erwan DELAGE authored Dec 11, 2020
  
  ad1b7e72
- Merge branch 'master' of gitlab.univ-nantes.fr:bird_pipeline_registry/microSysMics · d13e00a8
  Erwan DELAGE authored Dec 11, 2020
  
  d13e00a8
- Merge branch 'develop' · 61372ac6
  Erwan DELAGE authored Dec 11, 2020
  
  61372ac6
- Do not write deseq2 results if empty · 225aee30
  Erwan DELAGE authored Dec 11, 2020
  
  225aee30
19 Nov, 2020 2 commits
- Ajout de la taxonomie à DESeq2, boxplot en abondance TSS, tri sur condition et baseMean · 97a7fe0b
  Erwan DELAGE authored Nov 19, 2020
  
  97a7fe0b
- Decomposition de la taxonomie en taxorank · 3e92d3f6
  Erwan DELAGE authored Nov 19, 2020
  
  3e92d3f6
10 Nov, 2020 1 commit
- Probleme configfile configfiles quand le fichier de config est utilisé dans une règle · f4e771c6
  Erwan DELAGE authored Nov 10, 2020
  
  f4e771c6
04 Nov, 2020 1 commit
- Ajout de DESeq2 au pipeline · afd8497f
  Erwan DELAGE authored Nov 04, 2020
  
  afd8497f
03 Nov, 2020 1 commit
- Standardisation format sortie table d'abondances · 3037636c
  Erwan DELAGE authored Nov 03, 2020
  
  3037636c
06 Oct, 2020 1 commit
- Plot evolution nombre reads · 19be03b3
  Erwan DELAGE authored Oct 06, 2020
  
  19be03b3
10 Sep, 2020 1 commit
- change CMD options · 0314c8cd
  Damien VINTACHE authored Sep 10, 2020
  
  0314c8cd
09 Sep, 2020 2 commits
- markdown syntax · 6fc8956e
  Damien VINTACHE authored Sep 09, 2020
  
  6fc8956e
- remove the cleanData stage and describe the docker container usage · 67abd4c2
  Damien VINTACHE authored Sep 09, 2020
  
  67abd4c2
08 Sep, 2020 3 commits
- use continuous integration only for branch master · 6bed82a2
  Damien VINTACHE authored Sep 08, 2020
  
  6bed82a2
- configure snakemake execution · dabc8537
  Damien VINTACHE authored Sep 08, 2020
  
  dabc8537
- rename .ci/jenkins to .ci/scripts · cc014f32
  Damien VINTACHE authored Sep 08, 2020
  
  cc014f32