Commit 8e786e2b authored by Damien VINTACHE's avatar Damien VINTACHE
Browse files

remove .snakemake directory, update pipeline name

parent 8185fb84
......@@ -10,14 +10,17 @@ then
fi
echo "=== workspace : ${3} ==="
ls ${3}
ls -al ${3}
echo "=== check input data ==="
ls ${1}
ls ${1}/projetTest${2}
ls ${1}/projetTest${2}/fastq
ls -al ${1}
ls -al ${1}/projetTest${2}
ls -al ${1}/projetTest${2}/fastq
# remove output data
echo "=== remove output data ==="
rm -Rf ${1}/projetTest${2}/results/*
rm -f ${3}/deblur.log
# remove snakemake directory to avoid snakemake lock
rm -f ${1}/.snakemake
......@@ -22,7 +22,7 @@ then
# Install of the DeblurPipeline environment
conda env create -n DeblurPipeline -qf ${2}/conda/DeblurEnv.yml
# Install of the TophatEnv environment
# Install of the QiimeEnv environment
conda env create -qf ${2}/conda/QiimeEnv.yml
elif [ ${3} = "Package" ]
......
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