Commit 7d8834fc authored by Philippe BORDRON's avatar Philippe BORDRON
Browse files

fix bad copy/paste in scripts/

parent 7ebcac9c
Pipeline #31832 failed with stages
in 23 minutes and 33 seconds
...@@ -56,7 +56,7 @@ try: ...@@ -56,7 +56,7 @@ try:
dada2_stats = pd.read_csv(OUTDIR + "/dada2/stats/stats.csv", sep="\t", index_col=0) dada2_stats = pd.read_csv(OUTDIR + "/dada2/stats/stats.csv", sep="\t", index_col=0)
dada2_stats.drop("#q2:types", inplace=True) dada2_stats.drop("#q2:types", inplace=True)
df.index = df.index.astype(str) # Force index as string even if "#q2:types" is missing dada2_stats.index = dada2_stats.index.astype(str) # Force index as string even if "#q2:types" is missing
stats = pd.merge(stats, dada2_stats[["filtered", "denoised", "merged", stats = pd.merge(stats, dada2_stats[["filtered", "denoised", "merged",
"non-chimeric"]], left_index=True, right_index=True) "non-chimeric"]], left_index=True, right_index=True)
stats = stats.astype(int) stats = stats.astype(int)
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